Publications

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2024

  • Hunter, Peter J., Weiwei Ai, and David P. Nickerson. "Energy-based bond graph models of glucose transport with SLC transporters." Biophysical Journal (accepted).
  • Hunter, P., de Bono, B., Brooks, D., Christie, R., Hussan, J., Lin, M., & Nickerson, D. (2024). The Physiome Project and Digital Twins. IEEE Reviews in Biomedical Engineering.
  • Weiwei Ai, David P. Nickerson, and Peter Hunter Energy-based multiscale modelling and system analysis framework. [abstract - accepted for presentation]. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • Verlyck, M. A., Zhao, D., Nickerson, D. P., Edwards, N. C., Legget, M. E., Doughty, R. N., Nash, M. P., Poppe, K. K. & Babarenda Gamage, T. P. A standards-based software tool to support prognostic modelling: application to exemplar heart failure risk scores. European Society of Cardiology Congress. 2024.
  • Verlyck, M. A., Zhao, D., Nash, M. P., Nickerson, D. P. & Babarenda Gamage, T. P. From clinical measurements to parameter personalisation: an end-to-end standardised framework to navigate computational physiology workflows. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • Babarenda Gamage T.P., Lin C., Gao, L., Xu J., Elsayed A., Wu A, Verlyck, M, Sands G., Atalag K., Nash M.P., Hunter P.J., Nickerson D.P., 12 Labours DigitalTWINS platform: Enabling development and clinical translation of virtual human twins. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • Sands G.B., Randles H. & Nielsen P.M.F. Incorporating Wearable Sensor Data into Research Workflows. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • Dixon A., Laven R. & Nielsen P. 3D Optical Scanning Toward Personalised Whole-Body Models. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • BS Ebrahimi, H.F Chan, P Khwaounjoo, F Argus, M Nash, D Kaye, T Joseph, H Whitford, A Doi, D McGiffin, M.H. Tawhai. Estimating pulmonary haemodynamics and vascular resistance in CTEPH from pre- and post-endarterectomy CTPA.European respiratory congress 64 (Suppl 68), PA5226
  • J. John, H. Kuman, K.S. Burrowes, H.-F. Chan, S.P. Bhatt, G. Jin, E. Golovina, J.M. O’Sullivan, M.H. Tawhai, Lung Tissue Heterogeneity in Non-smokers, Smokers without Airflow Obstruction, and COPD, European Respiratory Journal 64 (n.d.) PA3039. https://doi.org/10.1183/13993003.congress-2024.PA3039.
  • P. Khwaounjoo, A. Dixon, A. HajiRassouliha, E.L. Po Tang, M. Webster, A. Taberner, P. Nielsen, M. Nash, N. Edwards, Y. Cakmak, Non-Contact Quantification of Valvular Disease Using Carotid Waveforms From Skin Displacements; Echocardiography Pilot Study, Heart Lung Circ 33 (2024) S389. https://doi.org/10.1016/j.hlc.2024.06.568.
  • A. Rahimi, J. John, K.S. Burrowes, A. Clark, F.N. Rahaghi, R. San Jose Estepar, M. Tawhai, Utilising self-similarity to model the morphometry of the pulmonary arteries, in: Pulmonary Hypertension, European Respiratory Society, 2024: p. PA1614. https://doi.org/10.1183/13993003.congress-2024.PA1614.
  • Ruobing Li, Alys Clark, Merryn Tawhai, David Nickerson, Kelly Burrowes, In silico modelling of the effect of vaping on pulmonary surfactant dynamics from alveolus to whole lung. [abstract - accepted for presentation]. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • Fariba Bahadori, Merryn Tawhai, Alys Clark, Computational modelling of coupled shear-induced NO signalling pathways in endothelial and smooth muscle cells of arterial walls. [abstract - accepted for presentation]. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • Ho-Fung Chan, Megan Soo, Haribalan Kumar, Daniel Cornfeld, Paul Condron, Taylor Emsden, Leigh Potter, Samantha Holdsworth, Merryn Tawhai Personalised computational models of paediatric lung structure from novel lung MRI. [abstract - accepted for presentation]. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • BS Ebrahimi, Haribalan Kumar, Alys Clark, Merryn Tawhai Integrating macro-vascular and micro-vascular models to elucidate wall shear stress dynamics in pulmonary hypertension: A novel approach to understanding CTEPH development. [abstract - accepted for presentation]. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • Ted Yeung, Thor Besier, Peter Hunter, Vickie Shim, Hexahedral mesh fitting using scaffolds and statistical shape modelling to reproduce the cortical bone morphology of the femur. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • Harnoor Saini, Julie Kim, Marc Hirner, Sumit Raniga, Desmond Bokor, Thor Besier, Classification of glenoid bone loss patterns using statistical shape modelling. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany.
  • Roshni Raghvani, Eric Shen, Harnoor Saini, Julie Choisne, Ted Yeung, Marc Hirner, Thor Besier, Combined shape model of the torso and upper limb. Combined Scientific Meetings of the Australian and New Zealand Society of Biomechanics (ANZSB) & the Australian and New Zealand Orthopaedic Research Society (ANZORS); 2024; Melbourne; Australia.
  • Enzo Allevard, Thor Besier, Julie Choisne, Tibia and fibula bones prediction from external shank skin shape in a paediatric population. Combined Scientific Meetings of the Australian and New Zealand Society of Biomechanics (ANZSB) & the Australian and New Zealand Orthopaedic Research Society (ANZORS); 2024; Melbourne; Australia.
  • Yidan Xu, Laura Carman, Thor Besier, Julie Choisne, Can Statistical Shape and Density Models Predict Femoral and Tibial Stress in a Paediatric Population? Combined Scientific Meetings of the Australian and New Zealand Society of Biomechanics (ANZSB) & the Australian and New Zealand Orthopaedic Research Society (ANZORS); 2024; Melbourne; Australia.
  • Julie Kim, Ted Yeung, Roshni Raghvani, Julie Choisne, Harnoor Saini, Thor Besier, Robust workflow for diaphyseal cortical bone thickness calculation in long bones. Combined Scientific Meetings of the Australian and New Zealand Society of Biomechanics (ANZSB) & the Australian and New Zealand Orthopaedic Research Society (ANZORS); 2024; Melbourne; Australia.
  • Harnoor Saini, Eric Shen, Ted Yeung, Marc Hirner, Des Bokor, Sumit Raniga, Thor Besier, A compound statistical shape model to investigate anatomical relationships of upper limb bones. Shoulder and Elbow Society of Australia; 2024; Brisbane, Australia.
  • Harnoor Saini, Massoud Akbarshahi, Marc Hirner, Des Bokor, Sumit Raniga , Thor Besier, Ted Yeung, Pre-morbid assessment and prediction of joint line and glenoid centre of rotation. Shoulder and Elbow Society of Australia; 2024; Brisbane, Australia.
  • Roshni Raghvani, Harnoor Saini, Ted Yeung, Marc Hirner, Thor Besier, Torso morphology influences scapula and glenoid position and orientation. Shoulder and Elbow Society of Australia; 2024; Brisbane, Australia.
  • Amy S Garrett , Mathias W Roesler, Omkar N Athavale, Peng Du, Shawn A Means, Alys R Clark, Leo K Cheng, 2024. Multichannel mapping of in vivo rat uterine myometrium exhibits both high and low frequency electrical activity in non-pregnancy. Sci Rep 2024 Mar 27;14(1):7316. doi: 10.1038/s41598-024-57734-3
  • Mathias W Roesler, Amy S Garrett, Mark L Trew, Dane Gerneke, Satya Amirapu, Leo K Cheng, Alys R Clark, 2024. Three-dimensional virtual histology of the rat uterus musculature using micro-computed tomography. J Anat 2024 Sep 10. doi: 10.1111/joa.14131.
  • Shawn A. Means, Jagir R. Hussan, Amy Garrett, Leo Cheng, Alys R. Clark, 2024. Electrical Wave Generation and Spatial Organisation in Uterine Tissue, J. Roy. Soc. Int (In second round review)
  • Garrett, A. S., Prince, B., Sands, G., Cheng, L. K., Clark, A. R., 2024. Tissue Clearing and 3D Imaging of Gap Junctions in Rat Uterine Myometrium. In 2024 46th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC)).
  • M. Roesler, S. Means, L. Cheng and A. Clark, “Electrophysiological Modeling of Uterine Smooth Muscles Cells During Estrus,” 2024 46th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), vol. 2024-July, 2024, pp. 1–4.
  • Pan F, Khoo K, Maso Talou GD, Song F, McGhee D, Doyle AJ, Nielsen PMF, Nash MP, Babarenda Gamage TP. Quantifying changes in shoulder orientation between the prone and supine positions from magnetic resonance imaging. Clin Biomech (Bristol, Avon). 2024 Jan;111:106157. doi: 10.1016/j.clinbiomech.2023.106157. Epub 2023 Nov 29. PMID: 38103526.
  • Garrett, A.S., Roesler, M.W., Athavale, O.N. et al. Multichannel mapping of in vivo rat uterine myometrium exhibits both high and low frequency electrical activity in non-pregnancy. Sci Rep 14, 7316 (2024). https://doi.org/10.1038/s41598-024-57734-3
  • Athavale ON, Avci R, Clark AR, Di Natale MR, Wang X, Furness JB, Liu Z, Cheng LK, Du P. Neural regulation of slow waves and phasic contractions in the distal stomach: a mathematical model. J Neural Eng. 2024 Jan 4;20(6):066040. doi: 10.1088/1741-2552/ad1610. PMID: 38100816; PMCID: PMC10765034.
  • Athavale ON, DiNatale MR, Avci R, Clark AR, Furness JB, Cheng LK, Du P. Mapping the rat gastric slow wave conduction pathway: Bridging in vitro and in vivo methods, revealing a loosely-coupled region in the distal stomach. Am J Physiol Gastrointest Liver Physiol. 2024 Jun 11. doi: 10.1152/ajpgi.00069.2024. Epub ahead of print. PMID: 38860855.
  • Geven, Bram & Zhao, Debbie & Creamer, Stephen & Dillon, Joshua & Quill, Gina & Edwards, Nicola & Legget, Malcolm & Doughty, Rob & Young, Alistair & Babarenda Gamage, Thiranja & Nash, Martyn. (2024). Automated Quality-Controlled Left Heart Segmentation from 2D Echocardiography. 10.1007/978-3-031-52448-6_10.
  • Creamer, Stephen & Zhao, Debbie & Quill, Gina & Hasaballa, Abdallah & Wang, Vicky & Babarenda Gamage, Thiranja & Edwards, Nicola & Legget, Malcolm & Lowe, Boris & Doughty, Rob & Arri, Satpal & Ruygrok, Peter & Young, Alistair & Paton, Julian & Maso Talou, Gonzalo & Nash, Martyn. (2024). Impact of Hypertension on Left Ventricular Pressure-Strain Loop Characteristics and Myocardial Work. 10.1007/978-3-031-52448-6_11.
  • Dillon, Joshua & Zhao, Debbie & Babarenda Gamage, Thiranja & Quill, Gina & Wang, Vicky & Edwards, Nicola & Sutton, Timothy & Lowe, Boris & Legget, Malcolm & Doughty, Rob & Young, Alistair & Nash, Martyn. (2024). Automated Segmentation of the Right Ventricle from 3D Echocardiography Using Labels from Cardiac Magnetic Resonance Imaging. 10.1007/978-3-031-52448-6_12.
  • Pan F, Khoo K, Maso Talou GD, Song F, McGhee D, Doyle AJ, Nielsen PMF, Nash MP, Babarenda Gamage TP. Quantifying changes in shoulder orientation between the prone and supine positions from magnetic resonance imaging. Clin Biomech (Bristol, Avon). 2024 Jan;111:106157. doi: 10.1016/j.clinbiomech.2023.106157. Epub 2023 Nov 29. PMID: 38103526.
     

Conference abstracts

  • Sands G.B., Randles H. & Nielsen P.M.F. Incorporating Wearable Sensor Data into Research Workflows. Virtual Physiological Human (VPH): Data-Driven Simulation Technologies for Clinical Decision Making; 2024; Stuttgart, Germany. doi:10.17608/k6.auckland.26815258.v2

  • Khwaounjoo, P., Dixon, A., HajiRassouliha, A., Po Tang, E. L., Webster, M., Taberner, A., Nielsen, P., Nash, M., Edwards, N. & Cakmak, Y. Non-Contact Quantification of Valvular Disease Using Carotid Waveforms From Skin Displacements—Echocardiography Pilot Study. in Heart Lung Circ S389 (2024). 10.1016/j.hlc.2024.06.568

  • Carman L, Besier T, Choisne J, editors. Predicting paediatric lower limb bone geometry using bony landmarks. European Society for Movement Analysis in Adults and Children (ESMAC); 2024; Oslo, Norway. doi:https://doi.org/10.1016/j.gaitpost.2024.07.052.

  • Besier T, Carman L, Choisne J, Passmore E, Modenese L, Carty C, editors. Harmonising historical clinical gait analysis data using personalised musculoskeletal models European Society for Movement Analysis in Adults and Children (ESMAC); 2024; Oslo, Norway. doi:https://doi.org/10.1016/j.gaitpost.2024.07.034

2023

  • Haggie, L., Schmid, L., Rohrle, O., Besier, T., McMorland, A., & Saini, H. (2023). Linking cortex and contraction-Integrating models along the corticomuscular pathway. Front Physiol, 14, 1095260. https://doi.org/10.3389/fphys.2023.1095260
  • Astley, J.R., Biancardi, A.M., Hughes, P.J.C., Marshall, H., Collier, G.J., Chan, H.F., Saunders, L.C., Smith, L.J., Brook, M.L., Thompson, R., Rowland-Jones, S., Skeoch, S., Bianchi, S.M., Hatton, M.Q., Rahman, N.M., Ho, L.-P., Brightling, C.E., Wain, L.V., Singapuri, A., Evans, R.A., Moss, A.J., McCann, G.P., Neubauer, S., Raman, B., , Wild, J.M. and Tahir, B.A. (2023). Implementable Deep Learning for Multi-sequence Proton MRI Lung Segmentation: A Multi-center, Multi-vendor, and Multi-disease Study. J Magn Reson Imaging. https://doi.org/10.1002/jmri.28643
  • Saunders LC, Collier GJ, Chan HF, Hughes PJC, Smith LJ, Watson J, Meiring J, Gabriel Z, Newman T, Plowright M, Wade P, Eaden JA, Thomas S, Strickland S, Gustafsson L, Bray J, Marshall H, Capener DJ, Armstrong L, Rodgers J, Brook M, Biancardi AM, Rao MR, Norquay G, Rodgers O, Munro R, Ball JE, Stewart NJ, Lawrie A, Jenkins G, Grist J, Gleeson F, Schulte RF, Johnson KM, Wilson FJ, Cahn A, Swift AJ, Rajaram S, Mills GH, Watson L, Collini PJ, Lawson R, Thompson AAR, Wild JM. (2023). Longitudinal Lung Function Assessment of Patients Hospitalized With COVID-19 Using 1H and 129Xe Lung MRI. Chest. https://doi.org/10.1016/j.chest.2023.03.024.
  • Moghadam SM, Yeung T, Choisne J, A comparison of machine learning models’ accuracy in predicting lower-limb joints’ kinematics, kinetics, and muscle forces from wearable sensors, Sci Rep 13, 5046 (2023).
  • Kumar H., Green R., Cornfeld D.M., Condron P., Emsden T., Elsayed A., Zhao D., Gilbert K., Nash M.P., Clark A.R., Tawhai M.H., Burrowes K., Murphy R., Tayebi M., McGeown J., Kwon E., Shim V., Wang A., Choisne J., Carman L., Besier T. F., Handsfield H., Babarenda Gamage T.P., Shen J., Maso Talou G.D., Safaei S., Maller J.J., Taylor D., Potter L., Holdsworth S., Wilson G., Roadmap for an imaging and modelling paediatric study in rural NZ, Frontiers in Physiology, 14, 2023.
  • Carman L, Besier TF, Choisne J. Predicting the hip joint centre in children: New regression equations, linear scaling, and statistical shape modelling, Journal of Biomechanics, 142, 2022.
  • B.S. Ebrahimi, P. Khwaounjoo, F. Argus, H.F. Chan, M.P. Nash, D. McGiffin ,D. Kaye, A. Doi, T. Joseph, H. Whitford, M.H. Tawhai., Predicting Patient Status in Chronic Thromboembolic Pulmonary Hypertension Using a Biophysical Model, EMBC 2023
  • Means, S.A., Md A. Ali, Ho, H., Illuminating HBV with multi-scale modeling; Frontiers Syst. Biol, Sec. Multiscale Mechanistic Modeling; Vol 3 20 Feb 2023
  • Athavale ON, Avci R, Cheng LK, Du P. Computational models of autonomic regulation in gastric motility: Progress, challenges, and future directions. Frontiers in Neuroscience. 2023;17.
  • Di Natale MR, Athavale ON, Wang X, Du P, Cheng LK, Liu Z, Furness JB. Functional and anatomical gastric regions and their relations to motility control. Neurogastroenterol Motil. 2023 Mar 13:e14560. PMID: 36912719
  • Jayathungage Don TD, Safaei S, Maso Talou GD, Russell PS, Phillips ARJ, Reynolds HM. Computational fluid dynamic modeling of the lymphatic system: a review of existing models and future directions. Biomech Model Mechanobiol. 2023 Oct 30. doi: 10.1007/s10237-023-01780-9
  • P Khwaounjoo, A Dixon, A Hajirassouliha, E Lam Po Tang, M Webster, A Taberner, P Nielsen, M Nash, Y Cakmak (2023). Non-contact quantification of aortic stenosis and mitral regurgitation using carotid waveforms from skin displacements. Physiological Measurement. https://doi.org/10.1088/1361-6579/ace9ac
  • Page MI, Nicholson R, Tawhai MH, Clark AR, Kumar H. ‘Improved Electrical Impedance Tomography Reconstruction via a Bayesian Approach with an Anatomical Statistical Shape Model’. IEEE Trans Biomed Eng. 70(8):2486-2495, 2023
  • Ashworth ET, Burrowes KS, Clark AR, Ebrahimi BSS, Tawhai MH. ‘An in silico approach to understanding the interaction between cardiovascular and pulmonary lymphatic dysfunction’. Am J Physiol Heart Circ Physiol. 324(3):H318-H329, 2023
  • John J, Clark AR, Kumar H, Vandal AC, Burrowes KS, Wilsher ML, Milne DG, Bartholmai B, Levin DL, Karwoski R, Tawhai MH.‘Pulmonary vessel volume in idiopathic pulmonary fibrosis compared with healthy controls aged > 50 years’. Sci Rep. 13(1):4422, 2023
  • Fernandez, J., Shim, V., Schneider, M., Choisne, J., Handsfield, G., Yeung, T., Zhang, J., Hunter, P., & Besier, T. (2023). A Narrative Review of Personalized Musculoskeletal Modeling Using the Physiome and Musculoskeletal Atlas Projects. J Appl Biomech, 39(5), 304-317. https://doi.org/10.1123/jab.2023-0079
  • Carman, L., Besier, T., Stott, N. S., & Choisne, J. (2023). Sex differences in linear bone measurements occur following puberty but do not influence femoral or tibial torsion. Sci Rep, 13(1), 11733. https://doi.org/10.1038/s41598-023-38783-6
  • Means, S.A., Roesler, M.W., Garrett, A.S., Cheng, L. and Clark, A.R., 2023. Steady-state approximations for Hodgkin-Huxley cell models: Reduction of order for uterine smooth muscle cell model. PLOS Computational Biology, 19(8), p.e1011359.
  • Garrett AS, Means SA, Roesler MW, Miller KJ, Cheng LK, Clark AR. Modeling and experimental approaches for elucidating multi-scale uterine smooth muscle electro-and mechano-physiology: A review. Frontiers in Physiology. 2022;13.
Conference abstracts
 
  • AW Dixon, SP Richardson, H Suami, TP Babarenda Gamage, PMF Nielsen, HM Reynolds (2023). Toward Development of a Portable System for 3D Fluorescence Lymphography. 45th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. https://ieeexplore.ieee.org/abstract/document/10341111
  • IEEE Engineering in Medicine and Biology Society - Predicting Patient Status in Chronic Thromboembolic Pulmonary Hypertension Using a Biophysical Model Sep 2023,Engineering in Medicine and Biology conference (EMBC) Shaarbaf Ebrahimi B, Khwaounjoo P, Argus F, Chan H, Nash M, Tawhai M
  • B. Ebrahimi, ‘Predicting Patient Status in Chronic Thromboembolic Pulmonary Hypertension Using a Biophysical Model’, Annual Meeting of the IEEE Engineering in Medicine and Biology Society, Sydney Australia, July 2023
  • Carman L., Besier T.F., Choisne J., Combined shape model of the lower limb in a paediatric population provides accurate bone shape estimation, CMBBE 2023. doi: 10.1007/978-3-031-55315-8_16
  • Garrett AS, Roesler MW, Athavale ON, Du P, Cheng L, Clark AR. Acute In Vivo Measurement of Uterine Smooth Muscle Electrophysiology in Rats SRI 2023: Scientific Program & Abstracts. Reprod. Sci. 30 (Suppl 1), 1–324 (2023). https://doi.org/10.1007/s43032-023-01211-1

2022

  • Lara JE, Cheng LK, Rohrle O, Paskaranandavadivel N. Muscle-Specific High-Density Electromyography Arrays for Hand Gesture Classification. IEEE Trans Biomed Eng. 2022 May;69(5):1758-1766. Doi: 10.1109/TBME.2021.3131297. Epub 2022 Apr 21. PMID: 34847014.
  • L. Haggie, L. Schmid, O. Röhrle, T. Besier, A. McMorland, and H. Saini. Modelling the Corticomuscular Pathway - Linking Cortex and Contraction. Frontiers in Physiology - Computational Physiology and Medicine (in review), 2023
  • Sun Q, Chase JG, Zhou C, Tawhai MH, Knopp JL, Möller K, Shaw GM. Non-invasive over-distension measurements: data driven vs model-based. J Clin Monit Comput, 2022. doi: 10.1007/s10877-022-00900-7
  • SUN, Q, CHASE, JG, ZHOU, C, TAWHAI, MH, KNOPP, JL, MOELLER, K AND SHAW, GM (2022). “Over-distension Prediction via Hysteresis Loop Analysis and Patient-specific Basis Functions in a Virtual Patient Model,” Computers in Biology and Medicine, 141:105022, doi: 10.1016/j.compbiomed.2021.105022, 2022.
  • Zhou, C, Chase, JG, Sun, Q, Knopp, JL, Tawhai, MH, Desaive, T, Moeller, K, Shaw, GM, Chiew, YS and Benyo, B. “Reconstructing Asynchrony for Mechanical Ventilation Using a Hysteresis Loop Virtual Patient Model,” Biomed Eng Online, 21(1):16, 20-pages, doi: 10.1186/s12938-022-00986-9, 2022.
  • Yahya, Y., Hunter, I., Besier, T., Taberner, A., & Ruddy, B. (2022). Shoulder Joint Stiffness in a Functional Posture at Various Levels of Muscle Activation. IEEE Trans Biomed Eng, 69(7), 2192-2201. https://doi.org/10.1109/TBME.2021.3138398
  • Rooks, N. B., Besier, T. F., & Schneider, M. T. Y. (2022). A Parameter Sensitivity Analysis on Multiple Finite Element Knee Joint Models. Front Bioeng Biotechnol, 10, 841882. https://doi.org/10.3389/fbioe.2022.841882
  • Halloran, J. P., Abdollahi Nohouji, N., Hafez, M. A., Besier, T. F., Chokhandre, S. K., Elmasry, S., Hume, D. R., Imhauser, C. W., Rooks, N. B., Schneider, M. T. Y., Schwartz, A., Shelburne, K. B., Zaylor, W., & Erdemir, A. (2022). Assessment of reporting practices and reproducibility potential of a cohort of published studies in computational knee biomechanics. J Orthop Res. https://doi.org/10.1002/jor.25358
  • Gallina, A., Disselhorst-Klug, C., Farina, D., Merletti, R., Besomi, M., Holobar, A., Enoka, R. M., Hug, F., Falla, D., Sogaard, K., McGill, K., Clancy, E. A., Carson, R. G., van Dieen, J. H., Gandevia, S., Lowery, M., Besier, T., Kiernan, M. C., Rothwell, J. C., . . . Hodges, P. W. (2022). Consensus for experimental design in electromyography (CEDE) project: High-density surface electromyography matrix. J Electromyogr Kinesiol, 64, 102656. https://doi.org/10.1016/j.jelekin.2022.102656
  • Carman, L., Besier, T. F., & Choisne, J. (2022). Morphological variation in paediatric lower limb bones. Sci Rep, 12(1), 3251. https://doi.org/10.1038/s41598-022-07267-4
  • Behdad Shaarbaf Ebrahimi, Haribalan Kumar, Merryn H. Tawhai, Kelly S. Burrowes, Eric A. Hoffman, Alys R. Clark. Simulating Multi-Scale Pulmonary Vascular Function by Coupling Computational Fluid Dynamics With an Anatomic Network Model. Front. Netw. Physiol., 25 April 2022 https://doi.org/10.3389/fnetp.2022.867551.
  • Dabbour AH, Tan S, Kim SH, Guild SJ, Heppner P, McCormick D, Wright BE, Leung D, Gallichan R, Budgett D, Malpas SC. The Safety of Micro-Implants for the Brain. Front Neurosci. 2021 Dec 9;15:796203. doi: 10.3389/fnins.2021.796203. PMID: 34955740; PMCID: PMC8695845.
  • Nynke B Rooks; Marco T Y Schneider; Ahmet Erdemir; Jason P Halloran; Peter J Laz; Kevin B Shelburne; Donald R Hume; Carl W Imhauser; William Zaylor; Shady Elmasry; Ariel Schwartz; Snehal K Chokhandre; Neda Abdollahi Nohouji; Thor F Besier. A Method to Compare Heterogeneous Types of Bone and Cartilage Meshes. Journal of Biomechanical Engineering Doi: 10.1115/1.4051281. Pmid: 34041519.
  • Frontiers in Physiology special edition research topic: Personalized Whole-Body Physiological Models for Human Health Applications was set up with the goal of this Research Topic is to publish a wide range of approaches to the development of clinically relevant whole-body models that incorporate mechanistic multiscale models, and to stimulate new collaborations among researchers with complementary skills to tackle these very challenging problems in new ways. It is a collaboration with Wu Tsai Human Performance Alliance and currently has 3 publications and 5 more are under review.
  • Avilés-Rojas Nibaldo, Hurtado Daniel E. (2022). Whole-lung finite-element models for mechanical ventilation and respiratory research applications. Frontiers in Physiology, 13. 10.3389/fphys.2022.984286
  • Garrett Amy S., Means Shawn A., Roesler Mathias W., Miller Kiara J. W., Cheng Leo K., Clark Alys R. (2022). Modeling and experimental approaches for elucidating multi-scale uterine smooth muscle electro- and mechano-physiology: A review. Frontiers in Physiology, 13. 10.3389/fphys.2022.1017649
  • Kim Nari, Pronto Julius D., Nickerson David P., Taberner Andrew J., Hunter Peter J. (2022). A novel modular modeling approach for understanding different electromechanics between left and right heart in rat. Frontiers in Physiology, 13. 10.3389/fphys.2022.965054
  • Noroozbabaee L, Blanco PJ, Safaei S, Nickerson DP (2022). A modular and reusable model of epithelial transport in the proximal convoluted tubule. PLoS ONE 17(11): e0275837. https://doi.org/10.1371/journal.pone.0275837
  • Cheng LK, Li L, Bonaz B, Chen JDZ. Editorial: Translational Side of Emerging Invasive and Non-invasive Stimulation Therapies. Front Neurosci. 2022 Mar 23;16:872551. doi: 10.3389/fnins.2022.872551. PMID: 35401080; PMCID: PMC8984023.

2021

  • Emig R, Zgierski-Johnston CM, Timmermann V, et al. Passive myocardial mechanical properties: meaning, measurement, models. Biophys Rev. 2021;13(5):587-610. doi:10.1007/s12551-021-00838-1
  • SUN Q, CHASE JG, ZHOU C, TAWHAI MH, KNOPP JL, MÖLLER K, SHAW GM. Over-distension prediction via hysteresis loop analysis and patient-specific basis functions in a virtual patient model, Computers in Biology and Medicine, 2021, 105022, https://doi.org/10.1016/j.compbiomed.2021.105022
  • ZHOU C, CHASE JG, KNOPP J, SUN Q, TAWHAI M, MOELLER K, HEINES SJ, BERGMANS DC, SHAW GM, DESAIVE T. Virtual patients for mechanical ventilation in the intensive care unit. Comp Meth Prog Biomed, 199:105912, 2021.
  • Lara J, Cheng LK, Roehrle O, Paskaranandavadivel N. Muscle-Specific High-Density Electromyography Arrays for Hand Gesture Classification. IEEE Trans Biomed Eng. 2021 Nov 30;PP. doi: 10.1109/TBME.2021.3131297. Epub ahead of print. PMID: 34847014.
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